PCAGEN is a handy, easy to use tool specially designed to help you perform Principal Component Analysis (PCA) on gene frequency data.
Graphical ordinations of samples is provided and the graph can be saved. The program also tests using randomizations the significance of total inertia as well as individual axes inertia.
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A principal component analysis (PCA) is a graphical and statistical method for reducing the dimensionality of a data set while retaining most of the variation.Ronny Killens – Shiloh
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Principal Component Analysis (PCA) is a multivariate statistic method commonly used to present data in a new coordinate system which reveals its most important information or pattern. Its main advantage is that the plot of the principal components reveals the spatial relationship between samples. The information is presented by scatter plots of the first two principal components for each sample. The more closely data points are positioned in these plots the greater is the spread and similarity of the data (high inertia).
PCAGEN is a handy, easy to use tool specially designed to help you perform Principal Component Analysis (PCA) on gene frequency data.
PCAGEN is a graphical user-friendly tool. The program is very easy to use and at the same time very powerful. The following data types are supported: tab-delimited text files (TSV), comma delimited files (CSV), gene frequency data (TSV, Excel), and individual sequence alignment files (FASTA).
PCAGEN Description:
Principal Component Analysis (PCA) is a multivariate statistic method commonly used to present data in a new coordinate system which reveals its most important information or pattern. Its main advantage is that the plot of the principal components reveals the spatial relationship between samples. The information is presented by scatter plots of the first two principal components for each sample. The more closely data points are positioned in these plots the greater is the spread and similarity of the data (high inertia).
Why do you want to perform Principal Component Analysis on a set of genes or samples?
In many cases it is interesting to present a set of genes or samples that is clearly separated or by the fact that they form a strong cluster. Some other examples of such an analysis are:
– You want to see if samples from a disease state differ significantly from a set of controls samples.
– You want to correlate the gene content of two sets of samples.
– You want to correlate the gene frequency of a set of samples with respect to some other samples.
– You want to model the correlation between a particular set of genes by the use of Principal Component Analysis.
PCAGEN is a handy, easy to use tool specially designed to help you perform Principal Component Analysis on gene frequency data.
PCAGEN is a graphical user-friendly tool. The program is very easy to use and at the same time very powerful. The following data types are supported: tab-delimited text files (TSV), comma delimited files (CSV), gene frequency data (
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7. xyloPGEN (PCA Tool for genotype data):
PCAGEN is a handy, easy to use tool specially designed to help you perform Principal Component Analysis (PCA) on genotype data.
Graphical ordinations of samples are provided and the graph can be saved. The program also tests using randomizations the significance of total inertia as well as individual axes inertia.
PCAGEN Description:
8. PLINK (PHASE)
PCAGEN is a handy, easy to use tool specially designed to help you perform Principal Component Analysis (PCA) on gene frequency data.
Graphical ordinations of samples are provided and the graph can be saved. The program also tests using randomizations the significance of total inertia as well as individual axes inertia.
PCAGEN Description:Q:
How to set the text size of static HTML pages rendered by phonegap?
I am working on a Phonegap app (on ios/android) where I want to have “big font” option in settings, where I can set the font size of my “html” pages rendered by phonegap. I don’t want my text font to be auto-scaled, since in my case this may cause pages to look horrible on small screens.
A:
You could use the CSS font-size property to set the font size globally. But, the font size will be applied to all elements in the DOM, which could cause layout issues.
To ensure your font is not scaled on iOS devices, I suggest to use font-family and to manually specify the size.
A:
Phonegap is an HTML5 app so it doesn’t include any custom CSS (as far as I know), so there’s no way to do this using CSS. You need to use JS to change the size of the font – but you can’t change the font-size of the body tag (because it’s generated), so you would need to change the size of the font on all elements in the page.
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What’s New in the?
PCAGEN is a handy, easy to use tool specially designed to help you perform Principal Component Analysis (PCA) on gene frequency data.
You can graphically ordinate your samples using the first two principal axes and save the result in graphical format. PCAGEN is also able to compare samples using a Randomization Test.
PCAGEN is written in ANSI C and has not been tested on 64-bit systems. PCAGEN
More Info:
PCAGEN is a handy, easy to use tool specially designed to help you perform Principal Component Analysis (PCA) on gene frequency data.
Graphical ordinations of samples is provided and the graph can be saved. The program also tests using randomizations the significance of total inertia as well as individual axes inertia.
PCAGEN Description:
PCAGEN is a handy, easy to use tool specially designed to help you perform Principal Component Analysis (PCA) on gene frequency data.
You can graphically ordinate your samples using the first two principal axes and save the result in graphical format. PCAGEN is also able to compare samples using a Randomization Test.
PCAGEN is written in ANSI C and has not been tested on 64-bit systems. PCAGEN
More Info:
This dissertation presents a statistical analysis of a dataset generated by the Tangled Protein Animation (TPA) program. The TPA program generates a sequence of skeletal models of a protein undergoing a conformational change. A dataset of 16 molecular dynamics trajectories of a protein, folding into multiple structures is analyzed.
The analysis involves simulations of transitions between the structures using the velocity model, calculating and analyzing the overlaps of the conformations, calculating a structural distance measure between the simulations, testing the assumption of independence underlying the “independence” randomization test, and the subjection of this data to a principal component analysis.
The results from the two methods of data processing are compared and contrasted, and the conclusion is drawn that the velocity model is highly dependent on the conformational search algorithm, and the data generated by it is not suitable for analysis by randomization testing.
This dissertation presents a statistical analysis of a dataset generated by the Tangled Protein Animation (TPA) program. The TPA program generates a sequence of skeletal models of a protein
System Requirements For PCAGEN:
MINIMUM:
OS: Windows XP, Windows Vista, Windows 7 or Windows 8.
Processor: 1.8 GHz Dual Core CPU
Memory: 1 GB RAM
Graphics: 512 MB
DirectX: Version 9.0
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